Hamilton Institute - Publications

Publications

Links: Hamilton Institute Thesis Archive

Year	Authors	Title
2014	LopezCaamal, F. and Oyarzun, D. and Middleton, R. and R.Garcia, M.	Spatial quantification of cytosolic Ca2+ accumulation in nonexcitable cells: An analytical study Computational Biology and Bioinformatics, IEEE/ACM Transactions on. DOI: 10.1109/TCBB.2014.2316010 [bibtex]
2014	Oyarzun, Diego A and Bramhall, Jo L and Lopez-Caamal, Fernando and Richards, Frances M and Jodrell, Duncan and Krippendorff, Ben-Fillippo	The EGFR demonstrates linear signal transmission Integrative Biology, 6(8), pp736--742. DOI: 10.1039/C4IB00062E [bibtex]
2013	Oyarzun, Diego A and LopezCaamal, Fernando and Garcia, Miriam R and Middleton, Richard H and Weisse, Andrea Y	Cumulative signal transmission in nonlinear reaction-diffusion networks PloS one, 8(5). DOI: 10.1371/journal.pone.0062834 [bibtex]
2011	D. A. Oyarzun	Optimal control of metabolic networks with saturable enzyme kinetics. IET Systems Biology, in press [bibtex]
2010	F. LopezCaamal, D. A. Oyarzun, J. A. Moreno, D. Kalamatianos	Control structure and limitations of biochemical networks Proceedings of the American Control Conference 2010, pp6668 - 6673 [bibtex]
2010	Diego A. Oyarzun	A control-theoretic approach to dynamic optimization of metabolic networks PhD Thesis, Hamilton Institute, NUI Maynooth, Ireland [bibtex]
2010	D.A. Oyarzun and M. Chaves	Global gene regulation in metabolic networks. Under review [bibtex]
2009	D. Oyarzun, B. Ingalls, R.H. Middleton and D. Kalamatianos	Sequential activation of metabolic pathways: a dynamic optimization approach. Bulletin of Mathematical Biology, 71(8), pp1851-1872. DOI: 10.1007/s11538-009-9427-5 [bibtex]
2009	A. Peters, D. Oyarzun, E. Silva, and M. Salgado.	Analytic characterization of a stabilizing feedback for LTI plants European Control Conference, Budapest, Hungary, 2009 [bibtex]
2009	Ben-Fillippo Krippendorff, Diego Oyarzun and Wilhelm Huisinga	Ligand accumulation counteracts therapeutic inhibition of receptor systems Foundations of Systems Biology & Engineering 2009, Denver, USA., pp173-176 [bibtex]
2008	P. Lezana, J. Rodríguez, and D. Oyarzun	Cascaded multilevel inverter with regeneration capability and reduced number of switches. IEEE Transactions on Industrial Electronics, 55, pp1059-1066 [bibtex]
2008	D. Oyarzun, B. Ingalls, R. Middleton, and D. Kalamatianos	Optimal metabolic pathway activation. Proceedings of the 17th IFAC World Congress, Seoul, Korea. [bibtex]
2007	M. Salgado, D. Oyarzun and E. Silva	H2 optimal ripple-free deadbeat controller design Automatica, 43(11), pp1961-1967 [bibtex]
2007	M. Salgado and D. Oyarzun	Double objective optimal multivariable ripple-free deadbeat control International Journal of Control, 80(5), pp763-773 [bibtex]
2007	E. Silva, D. Oyarzun and M. Salgado	On structurally constrained H2 performance bounds for stable mimo plant models IET Control Theory & Applications, 1(4), pp1033-1054 [bibtex]
2007	D. Oyarzun, B. Ingalls, and D. Kalamatianos	Optimal metabolic regulation by time varying enzyme activities: a control theoretic approach Proceedings of the Foundations of Systems Biology in Engineering Conference 2007, pp 491-496, Stuttgart, Germany. [bibtex]
2007	D. Oyarzun and M. Salgado	Optimal triangular approximation for linear stable multivariable systems Proceedings of American Control Conference, New York, USA, pp. 5158-5153. [bibtex]
2007	D. Oyarzun and E. Silva	Effect of downstream feedback on the achievable performance of feedback control loops for serial processes Proceedings of European Control Conference, Kos, Greece, pp. 1727-1733. [bibtex]
2006	M. Salgado and D. Oyarzun	Basic integrated modelling: A case study International Journal on Electrical Engineering Education, 43(3), pp217-231 [bibtex]
2006	D. Oyarzun and M. Salgado	Suboptimal triangular controller design methodology for full MIMO stable systems Proceedings of the 6th bi-ennial UKACC Control Conference, Glasgow, Scotland. [bibtex]
2005	P. Lezana, J. Rodríguez, D. Oyarzun and J. Pontt	Novel cell based on reduced single-phase active front end for multicell converters Proceedings of the 31st Annual Conference of the IEEE Industrial Electronics Society, Raleigh, USA, pp. 733-738. [bibtex]
2005	M. Salgado and D. Oyarzun	MIMO interactions in sampled-data systems Proceedings of the 16th IFAC World Congress, Prague, Czech Republic. [bibtex]

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