Dr. Dimitris Kalamatianos
Research Fellow
Hamilton Institute
Room 31
NUI Maynooth
Phone: +353 (0)1 708 6826
Fax: +353 (0)1 708 62 69
Email: dimitris.kalamatianos@nuim.ie
Dr. Dimitris Kalamatianos
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I was born in Cholargos, Attika (Greece) and I grew up in Pyrgos, Elia. I attended the University of Patras (Greece) as an undergraduate in 1996, obtaining a first class honours degree in electrical and computer engineering and receiving the prestigious scholarship from the I. Latsis Foundation. In October 2001, I started my Ph.D. in Electrical and Electronic Engineering at the University of Manchester Institute of Science and Technology (UMIST), UK. My research involved the development of a novel near-infrared spectrometer for non-intrusive life-science measurements and it was supported by the Engineering and Physical Sciences Research Council (EPSRC). Since October 2004, I have been a member of the Systems Biology group at the Hamilton Institute, National University of Ireland, Maynooth. I am now head of the Hamilton Institute's Image to Mathematical Model Transition (IMMT) team, a part of a National Biophotonics and Imaging Platform (NBIP), funded by HEA.
| Düßmann, H., Wenus, J., Kalamatianos, D., Paul, P., Wellstead, P., Huber, H. & Prehn, J. (2009), "Real-Time automated live cell image acquisition and analysis using confocal laser scanning microscopy", In Neuroscience 2009. Chicago, ILL, Oct 17--21, 2009. |
BibTeX:
@conference{Duessman:09,
author = {Düßmann, H. and Wenus, J. and Kalamatianos, D. and Paul, P. and Wellstead, P. and Huber, H. and Prehn, J.},
title = {Real-Time automated live cell image acquisition and analysis using confocal laser scanning microscopy},
booktitle = {Neuroscience 2009},
year = {2009}
}
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| Kalamatianos, D., Anastasiadis, A.D. & Liatsis, P. (2009), "A Nonextensive method for spectroscopic data analysis with Artificial Neural Networks", Brazilian Journal of Physics., August, 2009. Vol. 39(2A), pp. 488-494. |
BibTeX:
@article{Kalamatianos:09,
author = {Kalamatianos, D. and Anastasiadis, A. D. and Liatsis, P.},
title = {A Nonextensive method for spectroscopic data analysis with Artificial Neural Networks},
journal = {Brazilian Journal of Physics},
year = {2009},
volume = {39},
number = {2A},
pages = {488-494},
url = {http://www.sbfisica.org.br/bjp/files/v39_488.pdf}
}
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| López-Caamal, F., Readman, M.C., Moreno, J.A. & Kalamatianos, D. (2009), "Structure identification and control mechanisms in the Extrinsic Apoptosis Pathway", In Conference on Dynamics in Systems Biology. Aberdeen, Scotland, Sep 14-18, 2009. |
BibTeX:
@conference{Caamal:09b,
author = {López-Caamal, F. and Readman, M. C. and Moreno, J. A. and Kalamatianos, D.},
title = {Structure identification and control mechanisms in the Extrinsic Apoptosis Pathway},
booktitle = {Conference on Dynamics in Systems Biology},
year = {2009}
}
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| López-Caamal, F., Readman, M.C., Moreno, J.A. & Kalamatianos, D. (2009), "Structure Identification and Robustness Analysis of the Intrinsic and Extrinsic Apoptosis Pathways", In Cancer Systems Biology. Rostock, Germany, Jun 7-10, 2009. |
BibTeX:
@conference{Caamal:09a,
author = {López-Caamal, F. and Readman, M. C. and Moreno, J. A. and Kalamatianos, D.},
title = {Structure Identification and Robustness Analysis of the Intrinsic and Extrinsic Apoptosis Pathways},
booktitle = {Cancer Systems Biology},
year = {2009}
}
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| Oyarzún, D., Ingalls, B., Middleton, R. & Kalamatianos, D. (2009), "Sequential Activation of Metabolic Pathways: a Dynamic Optimization Approach", Bulletin of Mathematical Biology. |
BibTeX:
@article{Oyarzun:09,
author = {Oyarzún, D. and Ingalls, B. and Middleton, R. and Kalamatianos, D.},
title = {Sequential Activation of Metabolic Pathways: a Dynamic Optimization Approach},
journal = {Bulletin of Mathematical Biology},
year = {2009},
url = {http://dx.doi.org/10.1007/s11538-009-9427-5}
}
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| Paul, P., Düßmann, H., Bernas, T., Huber, H. & Kalamatianos, D. (2009), "Automatic noise quantification for confocal fluorescence microscopy images", Computerized Medical Imaging and Graphics. |
BibTeX:
@article{Paul:09b,
author = {Paul, P. and Düßmann, H. and Bernas, T. and Huber, H. and Kalamatianos, D.},
title = {Automatic noise quantification for confocal fluorescence microscopy images},
journal = {Computerized Medical Imaging and Graphics},
year = {2009},
note = {Submitted}
}
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| Paul, P., Kalamatianos, D., Huber, H., Wenus, J. & Düßmann, H. (2009), "Automatic Real-Time Detection of the Onset of Apoptosis in Confocal Fluorescence Microscopy", In Proceedings of the Focus on Microscopy Conference. Krakow, Poland. Apr 5--8 2009., pp. 240. |
BibTeX:
@inproceedings{Paul:09a,
author = {Paul, P. and Kalamatianos, D. and Huber, H. and Wenus, J. and Düßmann, H.},
title = {Automatic Real-Time Detection of the Onset of Apoptosis in Confocal Fluorescence Microscopy},
booktitle = {Proceedings of the Focus on Microscopy Conference},
year = {2009},
pages = {240}
}
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| Wenus, J., Düßmann, H., Paul, P., Kalamatianos, D., Rehm, M., Wellstead, P., Prehn, J. & Huber, H. (2009), "ALISSA - An Automated Live-Cell Imaging System for Signal-Transduction Analyses", Biotechniques. |
BibTeX:
@article{Wenus:09,
author = {Wenus, J. and Düßmann, H. and Paul, P. and Kalamatianos, D. and Rehm, M. and Wellstead, P. and Prehn, J. and Huber, H.},
title = {ALISSA - An Automated Live-Cell Imaging System for Signal-Transduction Analyses},
journal = {Biotechniques},
year = {2009},
note = {Accepted}
}
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| Zebrowska, M., Readman, M.C., Cloutier, M. & Kalamatianos, D. (2009), "A systems study of the autophagic pathway", In The 17th ECDO Euroconference on Apoptosis. Paris, France, Sep 23-26, 2009. |
BibTeX:
@conference{Zebrowska:09b,
author = {Zebrowska, M. and Readman, M. C. and Cloutier, M. and Kalamatianos, D.},
title = {A systems study of the autophagic pathway},
booktitle = {The 17th ECDO Euroconference on Apoptosis},
year = {2009}
}
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| Zebrowska, M., Readman, M.C., Cloutier, M. & Kalamatianos, D. (2009), "The autophagy pathway: A systems view", In Cancer Systems Biology. Rostock, Germany, Jun 7-10, 2009. |
BibTeX:
@conference{Zebrowska:09a,
author = {Zebrowska, M. and Readman, M. C. and Cloutier, M. and Kalamatianos, D.},
title = {The autophagy pathway: A systems view},
booktitle = {Cancer Systems Biology},
year = {2009}
}
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| Anastasiadis, A. & Kalamatianos, D. (2008), "Coating Weight Estimation Through Nonextensive Statistical Analysis", In Proceedings of the International Conference on Nonextensive Statistical Mechanics – Foundations and Applications. Foz do Iguaçu-PR, Brazil. Oct 27--31 2008. |
BibTeX:
@inproceedings{Anastasiadis:08,
author = {Anastasiadis, A.D. and Kalamatianos, D.},
title = {Coating Weight Estimation Through Nonextensive Statistical Analysis},
booktitle = {Proceedings of the International Conference on Nonextensive Statistical Mechanics – Foundations and Applications},
year = {2008}
}
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| Oyarzún, D., Ingalls, B., Middleton, R. & Kalamatianos, D. (2008), "Optimal Metabolic Pathway Activation", In Proceedings of the 17th IFAC World Congress. Seoul, Korea. Jul 6--11 2008. |
BibTeX:
@inproceedings{Oyarzun:08,
author = {Oyarzún, D. and Ingalls, B. and Middleton, R. and Kalamatianos,D.},
title = {Optimal Metabolic Pathway Activation},
booktitle = {Proceedings of the 17th IFAC World Congress},
year = {2008},
url = {http://dx.doi.org/10.3182/20080706-5-KR-1001.0690}
}
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| Paul, P., Kalamatianos, D., Düßmann, H. & Huber, H. (2008), "Automatic quality assessment for fluorescence microscopy images", In Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering. Athens, Greece. Oct 8--10 2008., pp. 1-6. |
BibTeX:
@inproceedings{Paul:08b,
author = {Paul, P. and Kalamatianos, D. and Düßmann, H. and Huber, H.},
title = {Automatic quality assessment for fluorescence microscopy images},
booktitle = {Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering},
year = {2008},
pages = {1--6},
url = {http://dx.doi.org/10.1109/BIBE.2008.4696665}
}
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| Paul, P., Kalamatianos, D., Düßmann, H. & Huber, H. (2008), "Automated live cell image segmentation for on-line high-content screening", In Proceedings of the 9th International Conference on Systems Biology. Gothenburg, Sweden. Aug 22--28 2008. |
BibTeX:
@inproceedings{Paul:08a,
author = {Paul, P. and Kalamatianos, D. and Düßmann, H. and Huber, H.},
title = {Automated live cell image segmentation for on-line high-content screening},
booktitle = {Proceedings of the 9th International Conference on Systems Biology},
year = {2008},
url = {http://www.icsb-2008.org/downloads/ICSB2008_abstract_book.pdf}
}
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| Wellstead, P., Bullinger, E., Kalamatianos, D., Mason, O. & Verwoerd, M. (2008), "The rôle of control and system theory in systems biology", Annual Reviews in Control. Vol. 32, pp. 33-47. |
BibTeX:
@article{Wellstead:08,
author = {Wellstead, P. and Bullinger, E. and Kalamatianos, D. and Mason, O. and Verwoerd, M.},
title = {The rôle of control and system theory in systems biology},
journal = {Annual Reviews in Control},
year = {2008},
volume = {32},
pages = {33--47},
url = {http://dx.doi.org/10.1016/j.arcontrol.2008.02.001}
}
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| Bullinger, E., Findeisen, R., Kalamatianos, D. & Wellstead, P. (2007), "System and control theory furthers the understanding of biologicalsignal transduction", In Biology and control theory: current challenges. Berlin, Germany Vol. 357, pp. 123-135. Springer-Verlag. |
BibTeX:
@incollection{Bullinger:07,
author = {Bullinger, E. and Findeisen, R. and Kalamatianos, D. and Wellstead, P.},
title = {System and control theory furthers the understanding of biologicalsignal transduction},
booktitle = {Biology and control theory: current challenges},
publisher = {Springer-Verlag},
year = {2007},
volume = {357},
pages = {123--135},
url = {http://dx.doi.org/10.1007/978-3-540-71988-5_6}
}
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| Kalamatianos, D., Liatsis, P. & Wellstead, P. (2007), "Novel FT-NIR instrumentation for real-time blood monitoring", May 11--12, 2007. |
BibTeX:
@conference{Kalamatianos:07,
author = {Kalamatianos, D. and Liatsis, P. and Wellstead, P.E.},
title = {Novel FT-NIR instrumentation for real-time blood monitoring},
year = {2007}
}
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| Oyarzún, D., Ingalls, B. & Kalamatianos, D. (2007), "Optimal metabolic regulation by time varying enzyme activities: a control theoretic approach", In Proceedings of the Foundations of Systems Biology in Engineering Conference 2007. Stuttgart, Germany. Sep 9--12 2007., pp. 491-496. |
BibTeX:
@inproceedings{Oyarzun:07,
author = {Oyarzún, D. and Ingalls, B. and Kalamatianos, D.},
title = {Optimal metabolic regulation by time varying enzyme activities: a control theoretic approach},
booktitle = {Proceedings of the Foundations of Systems Biology in Engineering Conference 2007},
year = {2007},
pages = {491--496},
url = {http://www.hamilton.ie/d.o/docs/oyarzun_etal07c.pdf}
}
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| Kämper, F., Selchow, O., Kalamatianos, D., Wajant, H., Pfizenmaier, K. & Bullinger, E. (2006), "High-throughput image analysis of subcellular localization patterns of fluorescently labeled proteins", In Proceedings of the 7th International Conference on Systems Biology. Yokohama, Japan, Oct 9--13, 2006. |
BibTeX:
@conference{Kamper:06,
author = {Kämper, F. and Selchow, O. and Kalamatianos, D. and Wajant, H. and Pfizenmaier, K. and Bullinger, E.},
title = {High-throughput image analysis of subcellular localization patterns of fluorescently labeled proteins},
booktitle = {Proceedings of the 7th International Conference on Systems Biology},
year = {2006}
}
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| Kalamatianos, D., Liatsis, P. & Wellstead, P. (2006), "Near-infrared spectroscopic measurements of blood analytes using multi-layer perceptron neural networks", In Proceedings of the 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. New York, NY. Aug 30--Sep 3 2006., pp. 3541-3544. |
BibTeX:
@inproceedings{Kalamatianos:06b,
author = {Kalamatianos, D. and Liatsis, P. and Wellstead, P.E.},
title = {Near-infrared spectroscopic measurements of blood analytes using multi-layer perceptron neural networks},
booktitle = {Proceedings of the 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society},
year = {2006},
pages = {3541--3544},
url = {http://dx.doi.org/10.1109/IEMBS.2006.259986}
}
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| Kalamatianos, D., Wellstead, P., Edmunds, J. & Liatsis, P. (2006), "Active alignment for two-beam interferometers", Review of Scientific Instruments. Vol. 77(1) |
BibTeX:
@article{Kalamatianos:06a,
author = {Kalamatianos, D. and Wellstead, P.E. and Edmunds, J.M. and Liatsis, P.},
title = {Active alignment for two-beam interferometers},
journal = {Review of Scientific Instruments},
year = {2006},
volume = {77},
number = {1},
url = {http://dx.doi.org/10.1063/1.2150823}
}
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| Kalamatianos, D., Wellstead, P., Liatsis, P. & Houston, R. (2006), "Control and data analysis tool for a novel FT-NIR spectrometer", In Proceedings of the International Control Conference 2006. Glasgow, UK. Aug 30--Sep 1 2006. |
BibTeX:
@inproceedings{Kalamatianos:06c,
author = {Kalamatianos, D. and Wellstead, P.E. and Liatsis, P. and Houston, R.J.},
title = {Control and data analysis tool for a novel FT-NIR spectrometer},
booktitle = {Proceedings of the International Control Conference 2006},
year = {2006}
}
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| Kalamatianos, D., Liatsis, P. & Wellstead, P. (2005), "Classification of urea data from a novel near-infrared spectrometer", In Proceedings of SPIE. Volume 5969, pp. 379-387. |
BibTeX:
@inproceedings{Kalamatianos:05,
author = {Kalamatianos, D. and Liatsis, P. and Wellstead, P.E.},
title = {Classification of urea data from a novel near-infrared spectrometer},
booktitle = {Proceedings of SPIE},
year = {2005},
volume = {5969},
pages = {379--387},
url = {http://dx.doi.org/10.1117/12.629890}
}
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| Kalamatianos, D., Edmunds, J., Wellstead, P., Houston, R., Liatsis, P., Christie, S., Dewhurst, R. & Thorniley, M. (2004), "Dynamic alignment system for an FT-NIR Michelson interferometer", In Proceedings of the IEEE International Conference on Virtual Environments, Human-Computer Interfaces and Measurement Systems. Boston, MA. Jul 12-14 2004., pp. 120-124. |
BibTeX:
@inproceedings{Kalamatianos:04,
author = {Kalamatianos, D. and Edmunds, J.M. and Wellstead, P.E. and Houston, R.J. and Liatsis, P. and Christie, S.M. and Dewhurst, R.J. and Thorniley, M.S.},
title = {Dynamic alignment system for an FT-NIR Michelson interferometer},
booktitle = {Proceedings of the IEEE International Conference on Virtual Environments, Human-Computer Interfaces and Measurement Systems},
year = {2004},
pages = {120--124},
url = {http://dx.doi.org/10.1109/VECIMS.2004.1397201}
}
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| Kalamatianos, D., Edmunds, J., Wellstead, P., Houston, R., Christie, S., Thorniley, M. & Dewhurst, R. (2003), "An Algorithm Development Environment for an On-line FT-NIR Spectrometer", In Proceedings of SPIE. Volume 5201, pp. 138-145. |
BibTeX:
@inproceedings{Kalamatianos:03a,
author = {Kalamatianos, D. and Edmunds, J.M. and Wellstead, P.E. and Houston, R.J. and Christie, S.M. and Thorniley, M.S. and Dewhurst, R.J.},
title = {An Algorithm Development Environment for an On-line FT-NIR Spectrometer},
booktitle = {Proceedings of SPIE},
year = {2003},
volume = {5201},
pages = {138--145},
url = {http://dx.doi.org/10.1117/12.503538}
}
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| Kalamatianos, D., Houston, R., Edmunds, J., Wellstead, P., Liatsis, P., Thorniley, M. & Dewhurst, R. (2003), "Characterization and evaluation of portable FT-NIR instrumentation for life science measurements", In Proceedings of SPIE. Volume 5486, pp. 35-42. |
BibTeX:
@inproceedings{Kalamatianos:03b,
author = {Kalamatianos, D. and Houston, R.J. and Edmunds, J.M. and Wellstead, P.E. and Liatsis, P. and Thorniley, M.S. and Dewhurst, R.J.},
title = {Characterization and evaluation of portable FT-NIR instrumentation for life science measurements},
booktitle = {Proceedings of SPIE},
year = {2003},
volume = {5486},
pages = {35--42},
url = {http://dx.doi.org/10.1117/12.571368}
}
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