@article{P.-Wellstead:2008jx, author = {P. Wellstead and E. Bullinger and D. Kalamatianos and O. Mason and M. Verwoerd}, date-added = {2009-06-10 11:41:11 +0100}, date-modified = {2009-06-10 11:41:59 +0100}, journal = {Annual Reviews in Control}, pages = {33-47}, title = {The Role of Control and System Theory in Systems Biology}, volume = {32}, year = {2008} }
@article{Verwoerd:2009hi, author = {M. Verwoerd and O. Mason}, date-added = {2009-06-10 11:39:44 +0100}, date-modified = {2009-06-10 11:40:20 +0100}, journal = {SIAM Journal of Applied Dynamics }, number = {1}, pages = {417--453}, title = {On computing the critical coupling coefficient for the Kuramoto model on a complete Bipartite graph}, volume = {8}, year = {2009} }
@inbook{wellstead08, author = {S. N. Sreenath and K.-H. Cho and P. Wellstead.}, date-added = {2009-06-09 16:33:01 +0100}, date-modified = {2009-06-10 11:37:02 +0100}, editor = {O. Wolkenhauer, P. Wellstead and K-H Cho}, pages = {1--15}, publisher = {Portland Press}, series = {Essays in Biochemistry: Systems Biology, Lecture Notes in Control and Information Sciences}, title = {Modelling the dynamics of signalling pathways. }, volume = {357}, year = {2008} }
@inproceedings{Wellstead:2009uk, author = {M. Cloutier and Pierre O. Poliquin and Mario Jolicoeur and P. Wellstead}, booktitle = {Foundations of Systems Biology in Engineering (FOSBE), Denver, USA, to appear}, date-added = {2009-06-09 16:31:52 +0100}, date-modified = {2009-06-09 16:32:36 +0100}, title = {An integrative modelling approach for the implications of energy metabolism in neurodegeneration}, year = {2009} }
@inproceedings{krippendorff_etal09c, author = {B.-F. Krippendorff and D. A. Oyarz\'un and W. Huisinga}, booktitle = {Proceedings of the 3rd Foundations of Systems Biology and Engineering (FOSBE), Denver, USA, to appear}, date-added = {2009-06-09 16:29:45 +0100}, date-modified = {2009-06-09 16:31:19 +0100}, title = {Ligand accumulation counteracts therapeutic inhibition of receptor systems.}, year = {2009} }
@article{D.-Oyarzun:2009vf, author = {D. A. Oyarz\'un and Brian P. Ingalls and R. H. Middleton and D. Kalamatianos}, date-added = {2009-06-09 16:23:35 +0100}, date-modified = {2009-06-09 16:29:24 +0100}, doi = {10.1007/s11538-009-9427-5}, journal = {Bulletin of Mathematical Biology}, title = {Sequential activation of metabolic pathways: a dynamic optimization approach.}, year = {2009}, bdsk-url-1 = {http://dx.doi.org/10.1007/s11538-009-9427-5} }
@article{Wellstead:2009hb, author = {M. Cloutier and Fiachra B. Bolger and John P. Lowry and P. Wellstead}, date-added = {2009-06-09 16:21:29 +0100}, date-modified = {2009-06-09 16:23:11 +0100}, doi = {10.1007/s10827-009-0152-8}, journal = {Journal of Computational Neuroscience}, title = {An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements}, year = {2009}, bdsk-url-1 = {http://dx.doi.org/10.1007/s10827-009-0152-8} }
@inproceedings{Rutjes_etal07, author = {T. Rutjes and O. Mason and M. Verwoerd}, booktitle = {Foundations of Systems Biology in Engineering (FOSBE), Stuttgart, Germany}, owner = {Administrador}, pubtype = {proceedings}, title = {On the growth of the largest component in duplication-divergence models of protein interaction networks}, year = {2007} }
@article{MasVer08, author = {M. Verwoerd and O. Mason}, journal = {to appear in Siam Journal of Applied Dynamical Systems}, pubtype = {journal}, title = {Global phase-locking in finite populations of phase-coupled oscillators}, url = {http://arxiv.org/abs/0709.1558v1}, year = {2007}, bdsk-url-1 = {http://arxiv.org/abs/0709.1558v1} }
@incollection{Bull_etal07, author = {E. Bullinger and R. Findeisen and D. Kalamatianos and and P. Wellstead}, booktitle = {Biology and control theory: current challenges}, editor = {I. Queinnec and S. Tarbouriech and G. Garcia and S.-I. Niculescu}, owner = {d.o}, publisher = {Springer-Verlag, Berlin, Germany}, pubtype = {journal}, series = {Lecture Notes in Control and Information Sciences}, title = {System and control theory furthers the understanding of biological signal transduction}, volume = {357}, year = {2007} }
@article{Vera_etal07, author = {J. Vera and E. Balsa-Canto and P. Wellstead and J.R. Banga and O. Wolkenhauer}, journal = {Cellular Signalling}, pages = {1531--1541}, pubtype = {journal}, title = {Power-Law models of signal transduction pathways}, url = {http://dx.doi.org/10.1016/j.cellsig.2007.01.029}, volume = {19}, year = {2007}, bdsk-url-1 = {http://dx.doi.org/10.1016/j.cellsig.2007.01.029} }
@article{eissing07:_respon_bistab_apopt_roles_bax, author = {Ei\ss{}ing, T. and Waldherr, S. and Allg\"{o}wer, F. and Scheurich, P. and Bullinger, E.}, date = {4/2/2007}, date-modified = {2009-06-10 19:53:37 +0100}, journal = {Biophys. J.}, note = {In press}, owner = {eric}, project = {sysbio}, pubtype = {journal}, reviewed = {y}, title = {Response to Bistability in Apoptosis: Roles of {Bax}, {Bcl-2}, and Mitochondrial Permeability Transition Pores}, url = {http://www.biophysj.org/cgi/content/abstract/biophysj.106.100362v1}, year = 2007, bdsk-url-1 = {http://www.biophysj.org/cgi/content/abstract/biophysj.106.100362v1} }
@article{eissing2007a, author = {Ei\ss{}ing, T. and Waldherr, S. and Allg\"{o}wer, F. and Scheurich, P. and Bullinger, E.}, date = {11/1/2007}, date-modified = {2009-06-10 19:53:49 +0100}, journal = {BioSystems}, note = {In press}, owner = {eric}, project = {sysbio}, pubtype = {journal}, reviewed = {y}, title = {Steady state and (bi-)stability evaluation of simple protease signalling networks}, url = {http://www.sciencedirect.com/science/article/B6T2K-4MTK97M-1/2/4ceef3c319208dcadf52105e16d6d92e}, year = {2007}, bdsk-url-1 = {http://www.sciencedirect.com/science/article/B6T2K-4MTK97M-1/2/4ceef3c319208dcadf52105e16d6d92e} }
@article{jahu:06, annote = {hui}, author = {T. Jahnke and W. Huisinga}, journal = {J. Math. Biol.}, owner = {d.o}, pages = {1--26}, pdf = {http://compphysiol.mi.fu-berlin.de/pub/JaHu2005MasterEquation.pdf}, pubtype = {journal}, timestamp = {2007.02.07}, title = {Solving the chemical master equation for monomolecular reaction systems analytically}, volume = {54}, year = {2007} }
@article{MasVer07, author = {O. Mason and M.H.A. Verwoerd}, journal = {IET Systems Biology}, number = {2}, pages = {89--119}, pubtype = {journal}, title = {Graph Theory and Networks in Biology}, volume = {1}, year = {2007} }
@incollection{husc:06, annote = {hui - ehemals husc:05,husc:02}, author = {W. Huisinga and B. Schmidt}, booktitle = {Advances in Algorithms for Macromolecular Simulation}, editor = {Benedict Leimkuhler et al.}, owner = {d.o}, pages = {167--182}, pdf = {http://www.hamilton.ie/compphysiol/pub/MetastabDominantEV.pdf}, publisher = {Springer}, pubtype = {journal}, series = {Lecture Notes in Computational Science and Engineering}, timestamp = {2007.02.07}, title = {Metastability and Dominant Eigenvalues of Transfer Operators}, volume = {49}, year = {2006} }
@article{hutw:06, annote = {hui}, author = {W. Huisinga and R. Telgmann and M. Wulkow}, journal = {Drug Discovery Today}, number = {17 \& 18}, owner = {d.o}, pages = {800--805}, pdf = {http://www.hamilton.ie/compphysiol/pub/VirtualLab.pdf}, pubtype = {journal}, timestamp = {2007.02.07}, title = {The virtual lab approach to pharmacokinetic: Design principles and concepts}, volume = {11}, year = {2006} }
@article{klrh:06, annote = {hui}, author = {B.F. Krippendorff and P. Lienau and A. Reichel and W. Huisinga}, journal = {J. Biomolecular Screening}, note = {in press, online Nov 27}, owner = {d.o}, pdf = {http://www.hamilton.ie/compphysiol/pub/TwoPointAssay.pdf}, pubtype = {journal}, timestamp = {2007.02.07}, title = {Optimizing Classification of Drug-Drug Interaction Potential for {CYP450} Iso-Enzymes Inhibition Assays in Early Drug Discovery}, year = {2006} }
@incollection{WolkMesWell:06, address = {Berlin}, author = {O. Wolkenhauer and M. Mesarovic and P. Wellstead}, booktitle = {Systems Biology - Applications and Perspectives}, date = {2006-01-23}, editor = {E. Butcher and P. Bringmann and B. Weiss}, owner = {peter}, project = {sysbio}, publisher = {Springer Verlag}, pubtype = {book}, reviewed = {y}, title = {A Plea for More Theory in Molecular Biology}, year = 2006 }
@article{eb:millat06a, author = {T. Millat and E. Bullinger and J. Rohwer and O. Wolkenhauer}, date = {9 Mai 2006}, journal = {Math Bioscience}, note = {In press}, owner = {eric}, pmid = 17070871, project = {sysbio}, pubtype = {journal}, reviewed = {y}, title = {Approximations and their Consequences for Dynamic Modelling of Signal Transduction Pathways}, url = {http://dx.doi.org/10.1016/j.mbs.2006.08.012}, year = 2006, bdsk-url-1 = {http://dx.doi.org/10.1016/j.mbs.2006.08.012} }
@article{eb:nickel06a, author = {M. Nickel and E. Bullinger and F. Beckmann}, date = {9 February 2006}, journal = {Zoomorphology}, number = 4, owner = {eric}, pages = {225--239}, project = {sysbio}, pubtype = {journal}, reviewed = {y}, title = {Functional Morphology of {{\em Tethya}} species (Porifera): 2.\ Three-dimensional morphometrics on Spicules and Skeleton Superstructures of {{\em T.\ minuta}}}, url = {http://dx.doi.org/10.1007/s00435-006-0022-0}, volume = 125, year = 2006, bdsk-url-1 = {http://dx.doi.org/10.1007/s00435-006-0022-0} }
@article{ChoWell:05, author = {K-H. Cho and S-M. Choo and P. Wellstead and O. Wolkenhauer}, date = {2006-01-23}, journal = {FEBS Letters}, number = 20, owner = {peter}, pages = {4520--4528}, project = {sysbio}, pubtype = {journal}, reviewed = {y}, title = {A Unified Framework For Unravelling The Functional Interaction Structure Of A Biomolecular Network Based On Stimulus-Response Experiment Data}, volume = 579, year = 2005 }
@article{BIOCHEM05, author = {Wolkenhauer, O. and Sreenath, S. N. and Wellstead, P. and Ullar, M. and Cho, K-H.}, date = {2006-01-23}, journal = {Biochemical Society Trans.}, number = 3, owner = {peter}, pages = {505--515}, pmid = {15916553}, project = {sysbio}, pubtype = {journal}, reviewed = {y}, title = {A Systems and Signal-Oriented Approach to Intracellular Dynamics}, volume = 33, year = 2005 }
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